PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00148796001
Common NameGSBRNA2T00148796001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 278aa    MW: 30257.7 Da    PI: 8.5549
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00148796001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.51.6e-3977134461
               zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                           a++cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknk+s
  GSBRNA2T00148796001  77 LAVRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRS 134
                          5789****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3172133IPR003851Zinc finger, Dof-type
PfamPF027011.1E-3379133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3279133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MQPHHESYTF SGRTLCDNPT DLRSFSHSAL MDHLLQQQDV FGNYNKAREA MGGSCLDHDQ  60
KKPSPATGAA RPQPPELAVR CPRCDSTNTK FCYYNNYSLS QPRYFCKSCR RYWTKGGTLR  120
NIPVGGGCRK NKRSATRSLR TTPEPASHDG KAFSGGIFGG YSNNDHIDLS LAFALLNKQP  180
PGSSSQLGFG SSHQSDMESV FGTSQQKGNA GYAFGSGSSG LDMAMSDPNK VLWGFPWQMN  240
GESFGMMNMG GGGHVDQLDS GKEIWTNMNY INSGALM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00148796001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2347371e-178AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715840.10.0PREDICTED: dof zinc finger protein DOF5.3-like
SwissprotQ84TE91e-149DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBLA0A078DIG00.0A0A078DIG0_BRANA; BnaA03g09070D protein
STRINGBra006675.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61321845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.11e-150TARGET OF MONOPTEROS 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]