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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00148796001 | ||||||||
Common Name | GSBRNA2T00148796001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 278aa MW: 30257.7 Da PI: 8.5549 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.5 | 1.6e-39 | 77 | 134 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 a++cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknk+s GSBRNA2T00148796001 77 LAVRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRS 134 5789****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-31 | 72 | 133 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-33 | 79 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.32 | 79 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 81 | 117 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MQPHHESYTF SGRTLCDNPT DLRSFSHSAL MDHLLQQQDV FGNYNKAREA MGGSCLDHDQ 60 KKPSPATGAA RPQPPELAVR CPRCDSTNTK FCYYNNYSLS QPRYFCKSCR RYWTKGGTLR 120 NIPVGGGCRK NKRSATRSLR TTPEPASHDG KAFSGGIFGG YSNNDHIDLS LAFALLNKQP 180 PGSSSQLGFG SSHQSDMESV FGTSQQKGNA GYAFGSGSSG LDMAMSDPNK VLWGFPWQMN 240 GESFGMMNMG GGGHVDQLDS GKEIWTNMNY INSGALM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00148796001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC234737 | 1e-178 | AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013715840.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.3-like | ||||
Swissprot | Q84TE9 | 1e-149 | DOF53_ARATH; Dof zinc finger protein DOF5.3 | ||||
TrEMBL | A0A078DIG0 | 0.0 | A0A078DIG0_BRANA; BnaA03g09070D protein | ||||
STRING | Bra006675.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6132 | 18 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-150 | TARGET OF MONOPTEROS 6 |
Publications ? help Back to Top | |||
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